The Phylogenetic Handbook (Hardcover)

1. Basic concepts of molecular evolution Anne-Mieke Vandamme; 2. Sequence databases Guy Bottu and Marc Van Ranst; 3. Multiple alignment Des Higgins; 4. Nucleotide substitution models Korbinian Strimmer, Arndt von Heseler and Marco Salemi; 5. Phylogeny inference based on distance models Yves Van de Peer and Marco Salemi; 6. Phylogeny inference based on maximum liklihood methods with TREE-PUZZLE Korbinian Strimmer and Arndt von Haeseler; 7. Phylogeny inference based on parsimony and other methods with PAUP* David L. Swofford and Jack Sullivan; 8. Phylogenetic analysis using protein sequences Fred Opperdoes; 9. Substitution rate calibration with TREECON Yves van de Peer; 10. Selecting models of evolution David Posada; 11. Analysis of coding sequences Yoshiyuki Suzuki and Takashi Gojobori; 12. Splits Tree: a network based tool for exploring evolutionary relationships in molecular data Vincent Moulton; 13. Data exploration and tetrapod phylogeny using DAMBE Xuhua Xia and Zheng Xia; 14. Detecting recombination in viral sequences Mika Salminen; 15. LAMARC: estimating population genetic parameters from molecular data Mary K. Kuhner.