Plant Comparative Genomics (Hardcover)

· 제목 : Plant Comparative Genomics (Hardcover) 
· 분류 : 외국도서 > 과학/수학/생태 > 과학 > 생명과학 > 식물학
· ISBN : 9781071624289
· 쪽수 : 294쪽
· 출판일 : 2022-07-13

Part I: Phylogenetics and Evolution

 

1. Orthology Prediction and Phylogenetic Analysis Methods in Plants

            Abdoallah Sharaf and Sawsan Elateek

 

2. Species Tree Inference with SNP Data

            Michael Matschiner

 

3. High-Throughput Evolutionary Comparative Analysis of Long Intergenic Non-Coding RNAs in Multiple Organisms

            Anna C. Nelson Dittrich and Andrew D.L. Nelson

 

4. NGS-Indel Coder v2.0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data

            Julien Boutte, Mark Fishbein, and Shannon C.K. Straub

 

5. An SGSGeneloss-Based Method for Constructing a Gene Presence/Absence Table Using Mosdepth

            Cassandria G. Tay Fernandez, Jacob I. Marsh, Benjamin J. Nestor, Mitchell Gill, Agnieszka A. Golicz, Philipp E. Bayer, and David Edwards

 

6. POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes

            Yue Hao and Gavin C. Conant

 

Part II: Omics Analysis

 

7. Searching for Homologous Genes Using Daisychain

            Philipp E. Bayer and David Edwards

 

8. Detecting MicroRNAs in Plant Genomes with miRkwood

            Sylvain Legrand, Isabelle Guigon, and Helene Touzet

 

9. Pangenome Analysis of Plant Transcripts and Coding Sequences

            Bruno Contreras-Moreira, Alvaro Rodriguez del Rio, Carlos P. Cantalapiedra, Ruben Sancho, and Pablo Vinuesa

 

10. Metagenomics Bioinformatic Pipeline

            Diego Garfias-Gallegos, Claudia Zirion-Martinez, Edder D. Bustos-Diaz, Tania Vanessa Arellano-Fernandez, Jose Abel Lovaco-Flores, Aaron Espinosa-Jaime, J. Abraham Avelar-Rivas, and Nelly Selem-Mojica

 

11. Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach

            Victoria Mesa

 

12. Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants

            Samuel David Gamboa-Tuz, Alejandro Pereira-Santana, Tao Zhao, and M. Eric Schranz

 

13. Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis

            Francisco J. Perez-de los Santos, Jesus Emiliano Sotelo-Fonseca, America Ramirez-Colmenero, Hans-Wilhelm Nutzmann, Selene L. Fernandez-Valverde, and Katarzyna Oktaba

 

14. Isolation of Boechera stricta Developing Embryos for Hi-C

            Mariana Tiscareno-Andrade, Katarzyna Oktaba, and Jean-Philippe Vielle-Calzada

 

Part III: Experimental Procedures for Trait Characterization

 

15. Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens

            Oscar Estrada, Stephen M. Richards, and James Breen

 

16. Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-Aromatic Rice Germplasms

            Debarati Chakraborty

 

17. Efficient Protein Extraction Protocols for NanoLC-MS/MS Proteomics Analysis of Plant Tissues with High Proteolytic Activity: A Case Study with Pineapple Pulp

            Esau Bojorquez-Velazquez, Jose M. Elizalde-Contreras, Jesus Alejandro Zamora-Briseno, and Eliel Ruiz-May