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· 제목 : Protein-Protein Interaction Networks: Methods and Protocols (Paperback, 2020) 
· 분류 : 외국도서 > 과학/수학/생태 > 과학 > 생명과학 > 생화학
· ISBN : 9781493998753
· 쪽수 : 286쪽
· 분류 : 외국도서 > 과학/수학/생태 > 과학 > 생명과학 > 생화학
· ISBN : 9781493998753
· 쪽수 : 286쪽
목차
Preface…
Table of Contents…
Contributing Authors…
1. Predicting Protein-Protein Interactions using SPRINT
Yiwei Li and Lucian Ilie
2. Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text Mining Protocol
Kalpana Raja, Jeyakumar Natarajan, Finn Kuusisto, John Steill, Ian Ross, James Thomson, and Ron Stewart
3. Construction of Functional Protein Networks using Domain Profile Associations
Jung Eun Shim and Insuk Lee
4. Reconstruction of Protein-Protein Interaction Networks using Homology-Based Search: Application to the Autophagy Pathway of Ageing in Podospora anserina
Ina Koch, Oliver Philipp, Andrea Hamann, and Heinz Osiewacz
5. Predicting Interacting Protein Pairs by Co-Evolutionary Paralog Matching
Thomas Gueudre, Carlo Baldassi, Andrea Pagnani, and Martin Weigt
6. A Web-Based Protocol for Inter-Protein Contact Prediction by Deep Learning
Xiaoyang Jing, Hong Zeng, Sheng Wang, and Jinbo Xu
7. Visual Analysis of Protein-Protein Interaction Docking Models using COZOID Tool
J. Byska, A. Jurcik, K. Furmanova, B. Kozlikova, and J.J. Palecek
8. Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes
Genki Terashi, Charles Christoffer, and Daisuke Kihara
9. Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks
Farideh Halakou, Attila Gursoy, and Ozlem Keskin
10. Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID)
Chiara Pastrello, Max Kotlyar, and Igor Jurisica
11. Generation and Interpretation of Context-Specific Human Protein-Protein Interaction Networks with HIPPIE
Gregorio Alanis-Lobato and Martin H. Schaefer
12. Explore Protein-Protein Interactions for Cancer Target Discovery using the OncoPPi Portal
Andrey A. Ivanov
13. Perform Pathway Enrichment Analysis using ReactomeFIViz
Robin Haw, Fred Loney, Edison Ong, Yongqun He, and Guanming Wu
14. De Novo Pathway Enrichment with KeyPathwayMiner
Nicolas Alcaraz, Anne Hartebrodt, and Markus List
15. De Novo Pathway-Based Classification of Breast Cancer Subtypes
Markus List, Nicolas Alcaraz, and Richa Batra
16. Vienna Graph Clustering
Sonja Biedermann , Monika Henzinger , Christian Schulz, and Bernhard Schuster
17. On TD-WGcluster - Theoretical Foundations and Guidelines for the User
Angela Re and Paola Lecca
18. An Introductory Guide to Aligning Networks using SANA, the Simulated Annealing Network Aligner
Wayne B. Hayes
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