Statistical Human Genetics: Methods and Protocols (Hardcover, 2012)

1. Genetic terminology 2. Identification of genotype errors 3. Detecting pedigree relationship errors 4. Identifying cryptic relationships 5. Estimating allele frequencies 6. Testing departure from Hardy-Weinberg proportions 7. Estimating disequilibrium coefficients 8. Detecting familial aggregation 9. Estimating heritability from twin studies 10. Estimating heritability from nuclear family and pedigree data 11. Correcting for ascertainment 12. Segregation analysis using the unified model 13. Design considerations for genetic linkage and association studies 14. Model-based linkage analysis of a quantitative trait 15. Model-based linkage analysis of a binary trait 16. Model-free linkage analysis of a quantitative trait 17. Model-free linkage analysis of a binary trait 18. Single marker association analysis for unrelated samples 19. Single marker family-based association analysis conditional on parental information 20. Single marker family-based association analysis not conditional on parental information 21. Allowing for population stratification in association analysis 22. Haplotype inference 23. Multi-SNP haplotype analysis methods for association analysis 24. Detecting rare variants 25. The analysis of ethnic mixtures 26. Identifying gene interaction networks 27. Structural equation modeling 28. Genotype calling for the Affymetrix platform 29. Genotype calling for the Illumina platform 30. Comparison of requirements and capabilities of major multipurpose software packages