Algorithmic Bioprocesses (Paperback, 2009)

Monotony and Surprise: Pattern Discovery Under Saturation Constraints.- Information Content of Sets of Biological Sequences Revisited.- Duplication in DNA Sequences.- Sequence and Structural Analysis for Functional Non-coding RNAs.- Strategies for RNA-Guided DNA Recombination.- Reality-and-Desire in Ciliates.- Template-Guided Recombination: From Theory to Laboratory.- DNA Cages with Icosahedral Symmetry in Bionanotechnology.- Applying Symmetric Enumeration Method to One-Dimensional Assembly of Rotatable Tiles.- The Perils of Polynucleotides Revisited.- On Nonuniversal Symport/Antiport P Systems.- Spiking Neural P Systems: Recent Results, Research Topics.- Membrane Computing Schema: A New Approach to Computation Using String Insertions.- Understanding Network Behaviour by Structured Representations of Transition Invariants: A Petri Net Perspective on Systems and Synthetic Biology.- Quantitative Verification Techniques for Biological Processes.- A New Mathematical Model for the Heat Shock Response.- Artificial Biochemistry.- Process Calculi Abstractions for Biology.- Deriving Differential Equations from Process Algebra Models in Reagent-Centric Style.- A Multivolume Approach to Stochastic Modelling with Membrane Systems.- Log-Gain Principles for Metabolic P Systems.- Hybrid Method for Simulating Small-Number Molecular Systems.- Formal Models of the Calyx of Held.- On Involutions Arising from Graphs.- Parallel Computing by Xeroxing on Transparencies.- Some Undecidable Dynamical Properties for One-Dimensional Reversible Cellular Automata.- On Using Divide and Conquer in Modeling Natural Systems.- Niching Methods: Speciation Theory Applied for Multimodal Function Optimization