Computational Genomics (Hardcover, 2)

Large-scale pyrosequencing on the 454 GS FLX. Massively parallel short read sequencing using the Illumina Genome Analyzer. Single molecule real-time (SMRT) sequencing of PacBio RS systems. Algorithms for short read error correction. Accelerator-based techniques for short read error correction. Short-read mapping and alignment to reference genomics. Translational genomics via high-throughput sequencing. Graph-based approaches for de novo high-throughput genome assembly. Optimization-based approaches for genome assembly. Parallel methods for large-scale assembly of high-throughput sequences. Algorithms for metagenomics. RNA-seq based transcriptome analysis via high-throughput sequencing. Annotation of plant genomes using RNA-seq data.