Plant Genome Editing with Crispr Systems: Methods and Protocols (Hardcover, 2019)

Preface... Table of Contents... Contributing Authors... Part I Review on Plant DNA Repair and Genome Editing 1. Plant DNA Repair Pathways and their Applications in Genome Editing Qiudeng Que, Zhongying Chen, Tim Kelliher, David Skibbe, Shujie Dong, and Mary-Dell Chilton Part II CRISPR Design and Mutation Analysis 2. Rapid Screening of CRISPR/Cas9-Induced Mutants using the ACT-PCR Method Chun Wang and Kejian Wang 3. Decoding Sanger-Sequencing Chromatograms from CRISPR-Induced Mutations Xianrong Xie, Xingliang Ma, and Yao-Guang Liu Part III Multiplexed CRISPR-Cas9 Systems 4. Creating Large Chromosomal Deletions in Rice using CRISPR/Cas9 Riqing Li, Si Nian Char, and Bing Yang 5. A Multiplexed CRISPR-Cas9 Editing System Based on the Endogenous tRNA Processing Kabin Xie and Yinong Yang 6. A Single Transcript CRISPR-Cas9 System for Multiplex Genome Editing in Plants Xu Tang, Zhaohui Zhong, Qiurong Ren, Binglin Liu, and Yong Zhang 7. CRISPR-Act2.0: An Improved Multiplexed System for Plant Transcriptional Activation Aimee Malzahn, Yong Zhang, and Yiping Qi Part IV CRISPR-Cas9 Editing in Monocots 8. Generating Photoperiod-Sensitive Genic Male Sterile Rice Lines with CRISPR-Cas9 Weihang Gu, Dabing Zhang, Yiping Qi, and Zheng Yuan 9. Knocking Out MicroRNA Genes in Rice with CRISPR/Cas9 Jianping Zhou, Zhaohui Zhong, Hongqiao Chen, Mengqiao Yang, Qian Li, Xuelian Zheng, Yiping Qi, and Yong Zhang 10. An Agrobacterium-Mediated CRISPR-Cas9 Platform for Genome Editing in Maize Keunsub Lee, Huilan Zhu, Bing Yang, and Kan Wang Part V CRISPR-Cas9 Editing in Dicots 11. Fluorescence Marker-Assisted Isolation of Cas9-Free and CRISPR-Edited Arabidopsis Plants Hanchuanzhi Yu and Yunde Zhao 12. Creating Targeted Gene Knock-Outs in Brassica oleracea using CRISPR/Cas9 Tom Lawrenson, Penny Hundleby, and Wendy Harwood 13. Application of CRISPR/Cas9-Mediated Gene Editing in Tomato Nathan T. Reem and Joyce Van Eck 14. Genome Editing in Potato with CRISPR/Cas9 Satya Swathi Nadakuduti, Colby G. Starker, Daniel F. Voytas, C. Robin Buell, and David S. Douches 15. Visual Assay for Gene Editing using a CRISPR/Cas9 System in Carrot Cells Magdalena Klimek-Chodacka, Tomasz Oleszkiewicz, and Rafal Baranski 16. Genome Editing in Soybean with CRISPR/Cas9 Junqi Liu, Samatha Gunapati, Nicole T. Mihelich, Adrian O. Stec, Jean-Michel Michno, and Robert M. Stupar 17. Genome Editing in Citrus Tree with CRISPR/Cas9 Hongge Jia, Xiuping Zou, Vladimir Orbovic, and Nian Wang Part VI CRISPR-Cas12a Editing Systems 18. Plant Gene Knockout and Knockdown by CRISPR-Cpf1 (Cas12a) Systems Yingxiao Zhang, Yong Zhang, and Yiping Qi 19. Editing a Stomatal Developmental Gene in Rice with CRISPR/Cpf1 Abhishek Anand, Xiaojia Yin, Paul Quick, and Anindya Bandyopadhyay 20. Targeted Mutagenesis using FnCpf1 in Tobacco Akira Endo and Seiichi Toki Part VII Precise Gene Editing 21. Gene Replacement by Intron Targeting with CRISPR-Cas9 Jun Li, Xiangbing Meng, Jiayang Li, and Caixia Gao 22. Targeted Base Editing with CRISPR-Deaminase in Tomato Zenpei Shimatani, Tohru Ariizumi, Ushio Fujikura, Akihiko Kondo, Hiroshi Ezura, and Keiji Nishida Part VIII Non-Agrobacterium Based CRISPR Delivery Systems 23. Virus-Mediated Genome Editing in Plants using the CRISPR/Cas9 System Ahmed Mahas, Zahir Ali, Manal Tashkandi, and Magdy M. Mahfouz 24. Biolistic Delivery of CRISPR/Cas9 with Ribonucleoprotein Complex in Wheat Zhen Liang, Kunling Chen, and Caixia Gao 25. DNA-Free Genome Editing via Ribonucleoprotein (RNP) Delivery of CRISPR/Cas in Lettuce Jongjin Park, Aiden Y. Park, Slki Park, Jiyoung Yoon, Sunmee Choi, and Sunghwa Choe 26. An Automated Protoplast Transformation System Scott C. Lenaghan and C. Neal Stewart, Jr.