DNA Microarrays, Part A: Array Platforms and Wet-Bench Protocols: Volume 410 (Hardcover)

Section I. Array Platforms
Chapter 1: Getting started with microarrays
Chapter 2: The Affymetrix GeneChip® Platform: An Overview
Chapter 3: The Agilent In-situ-synthesized microarray platform
Chapter 4: Illumina Universal Bead Arrays
Chapter 5: Microarray Oligonucleotide-probes
Chapter 6: Automated liquid handling and high-throughput preparation of PCR amplified DNA for microarray fabrication
Chapter 7: The Printing Process - Tips on Tips
Chapter 8: Making and Using Spotted DNA Microarrays in an Academic Core Laboratory
Chapter 9: Printing your own Inkjet microarrays
Chapter 10: Peptide Nucleic Acid (PNA) microarrays made with (S, S)-trans-Cyclopentane-Constrained Peptide Nucleic Acids

Section II. Wet-Bench Protocols
Chapter 11: Good molecular technique
Chapter 12: Optimizing experiment and analysis parameters for spotted microarrays
Chapter 13: Sample Labeling: An Overview
Chapter 14: Genomic DNA as a general cohybridization standard for ratiometric microarrays
Chapter 15: Analysis of Sequence Specificities of DNA Binding Proteins with Protein Binding Microarrayt
Chapter 16: Mircroarray analysis of RNA processing and modification
Chapter 17: Mapping the distribution of Drosophila chromatin proteins by ChIP on chip
Chapter 18: DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase.
Chapter 19: Whole Genome Genotyping
Chapter 20: Mapping Drosophila Genomic Aberration Breakpoints with Comparative Genome Hybridization On Microarrays
Chapter 21: Performing Quantitative RT-PCR Experiments
Chapter 22: The Application of Tissue Microarrays in the Validation of Microarray Results
Chapter 23: Mapping Histone modifications by nucleosome immunoprecipitation