Microarray Technology Through Applications (Paperback)

1. Introduction to Microarray Technology  2. Immunoprecipitation with Microarrays to Determine the Genome-Wide Binding Profile of a DNA-Associated Protein  3.  Array-Based Comparative Genomic Hybridization (Array CGH) as a Tool for Solving Practical Biological and Medical Questions  4. Use of SNPs Arrays : Design, Tools and Applications  5. In vitro Analysis of Gene Expression  6. The Analysis of Cellular Transcriptional Response at the Genome Level : Two Case Studies with Relevance to Bacterial Pathogenesis  7. Functional Annotation of Microarray Experiments  8. Microarray Technology in Agricultural Research  9. Protein Microarrays  Protocol 1. Microarray Printing - Standard Operating Procedure for QIAGEN OPERON Oligonucleotide Arrays  Protocol  2. E. coli RNA Extraction  Protocol  3. Indirect Labeling of First-strand cDNA Probes  Protocol 4. Pre-Hybridization and Washing Protocol for UltraGAP Slides  Protocol 5. ChIP Procedure  Protocol 6. Array CGH  Protocol 7. In vitro Analysis of Gene Expression Using Run-off Microarray Analysis of Gene Expression (ROMA)  Appendix 1. Notes on Printing Glass DNA Microarray Slides  Appendix 2. Comparative Genomics : The Nature of CGH Analysis and Data Interpretation  Appendix 3. Useful Links  Appendix 4. Table 7