Modeling in Systems Biology : The Petri Net Approach (Hardcover)

Part I: Foundations Introduction Ina Koch and Falk Schreiber Biochemical Fundamentals Tiina Liiving, Syed M. Baker, and Bjorn H. Junker Petri Nets Wolfgang Reisig Part II: Modeling Techniques Discrete Modeling Andrea Sackmann Modeling Genetic Regulatory Networks Richard Banks, Victor Khomenko, and L. Jason Steggles Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling Ayumu Saito, Masao Nagasaki, Hiroshi Matsuno, and Satoru Miyano Stochastic Modeling Ivan Mura Quantitative Analysis Jorg Ackermann and Ina Koch Fuzzy Modeling Florian Erhard, Lukas Windhager, and Ralf Zimmer Part III: Biochemical Applications Topological Analysis of Metabolic and Regulatory Networks Stefan Schuster and Bjorn H. Junker Analysis of Dynamical Models of Signaling Networks with Petri Nets and Dynamic Graphs Simon Hardy and Ravi Iyengar A Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets Claudine Chaouiya, Hanna Klaudel, and Franck Pommereau A Case Study of HFPN Simulation: Finding Essential Roles of Ror Gene in the Interaction of Feedback Loops in Mammalian Circadian Clock Hiroshi Matsuno Prediction of Network Structure Annegret Wagler