DNA Barcodes: Methods and Protocols (Hardcover, 2012)

I. Introduction 1. Introduction (W. John Kress & David L. Erickson, Smithsonian, USA) II. DNA Barcodes for the Tree of Life 2. Introduction to Animal DNA Barcoding Protocols Lee A. Weigt, Amy Driskell, Andrea Ormos, Chris Meyer, and Allen Collins 3. DNA Barcodes for the Tree of Life - A. Animals - Insects John James Wilson and Scott E. Miller 4. Barcoding Methods for Invertebrates Nathaniel Evans & Gustav Paulay 5. DNA Barcoding of Amphibians and Reptiles Miguel Vences, Zoltan T. Nagy, Gontran Sonet, Erik Verheyen 6. DNA Barcoding Fishes Lee A. Weigt, Amy Driskell, Andrea Ormos 7. DNA Barcoding Birds: from Field Collection to Data Analysis Dario A. Lijtmaer, Kevin C. R. Kerr, Mark Y. Stoeckle and Pablo L.Tubaro 8. DNA Barcoding in Mammals Natalia V. Ivanova, Elizabeth L. Clare, Alex V. Borisenko 9. Methods for DNA Barcoding of Fungi Ursula Eberhardt 10. Methods for DNA Barcoding Photosynthetic Protists Emphasizing the Macroalgae and Diatoms Gary W. Saunders and Daniel C. McDevit 11. DNA Barcoding Methods for Land Plants Aron J. Fazekas, Maria L. Kuzmina, Steven G. Newmaster, and Peter M. Hollingsworth III. Generating DNA Barcode Data 12. Field Information Management Systems (FIMS) for DNA Barcoding Deck, John; Gross, Joyce; Stones-Havas, Steven; Davies, Neil1; Shapley, Rebecca & Meyer, Christopher 13. Laboratory Information Management Systems (LIMS) for DNA Barcoding Meaghan Parker; Steven Stones-Havas, Craig Starger and Chris Meyer 14. DNA Extraction, Preservation and Amplification Thomas Knebelsberger and Isabella Stoger 15. DNA Mini-barcodes Mehrdad Hajibabaei and Charly McKenna 16. Next Generation Sequencing: Multiplexing Multiple Barcode Amplicons into Single 454 Run Ryuji Machida and Nancy Knowlton IV. Applications of DNA Barcode Data 17. The Practical Evaluation of Barcode Efficacy John L. Spougeand Leonardo Marino-Ramirez 18. Plant DNA Barcodes, Taxonomic Management and Species Discovery in Tropical Forests Christopher W. Dick and Campbell O. Webb 19. Construction and Analysis of Phylogenetic Trees using DNA Barcode Data David L. Erickson and Amy C. Driskell 20. Phylogenetic Analyses of Ecological Communities Using Barcode Data Nathan G. Swenson V. Case Studies on DNA Barcodes 21. DNA Barcodes: FISH-BOL, a Case Study Robert D. Ward 22. Generating Plant DNA Barcodes for Trees in Long-term Forest Dynamics Plots W. John Kress, Ida C. Lopez, David L. Erickson 23. Future Directions David L. Erickson and W. John Kress