Bioinformatics: The Impact of Accurate Quantification on Proteomic and Genetic Analysis and Research (Hardcover)

Introduction Part I: RNA-Seq The Bench Scientist's Guide to Statistical Analysis of RNA-Seq Data; Craig R. Yendrek, Elizabeth A. Ainsworth, and Jyothi Thimmapuram Assembly of Non-Unique Insertion Content Using Next-Generation Sequencing; Nathaniel Parrish, Farhad Hormozdiari, and Eleazar Eskin RSEM: Accurate Transcript Quantification from RNA-Seq Data With or Without a Reference Genome; Bo Li and Colin N. Dewey Part II: Microarray A Regression System for Estimation of Errors Introduced by Confocal Imaging into Gene Expression Data In Situ; Ekaterina Myasnikova, Svetlana Surkova, Grigory Stein, Andrei Pisarev, and Maria Samsonova SPACE: An Algorithm to Predict and Quantify Alternatively Spliced Isoforms Using Microarrays; Miguel A. Anton, Dorleta Gorostiaga, Elizabeth Guruceaga, Victor Segura, Pedro Carmona-Saez, Alberto Pascual-Montano, Ruben Pio, Luis M. Montuenga, and Angel Rubio Link-Based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs; Hui Yu, Bao-Hong Liu, Zhi-Qiang Ye, Chun Li, Yi-Xue Li, and Yuan-Yuan Li Dimension Reduction with Gene Expression Data Using Targeted Variable Importance Measurement; Hui Wang and Mark J. van der Laan Part III: GWAS Genome-Wide Association Study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe; Emmanuelle Genin, Martin Schumacher, Jean-Claude Roujeau, Luigi Naldi,Yvonne Liss, Remi Kazma, Peggy Sekula, Alain Hovnanian, and Maja Mockenhaupt Genotyping Common and Rare Variation Using Overlapping Pool Sequencing; Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, and Eran Halperin Learning Genetic Epistasis Using Bayesian Network Scoring Criteria; Xia Jiang, Richard E. Neapolitan, M. Michael Barmada, and Shyam Visweswaran Combined Analysis of Three Genome-Wide Association Studies on vWF and FVIII Plasma Levels; Guillemette Antoni, Tiphaine Oudot-Mellakh, Apostolos Dimitromanolakis, Marine Germain, William Cohen, Philip Wells, Mark Lathrop, France Gagnon, Pierre-Emmanuel Morange, and David-Alexandre Tregouet Part IV: Proteomics Statistical Methods for Quantitative Mass Spectrometry Proteomic Experiments with Labeling; Ann L. Oberg and Douglas W. Mahoney MRCQuant: An Accurate LC-MS Relative Isotopic Quantification Algorithm on TOF Instruments; William E. Haskins, Konstantinos Petritis, and Jianqiu Zhang Index